從FASTA到VectorNTI的廣泛文件格式兼容性
來(lái)自世界各地的大量數(shù)據(jù)？ 通過(guò)簡(jiǎn)單的拖放導(dǎo)入各種格式，升級(jí)到Geneious非常簡(jiǎn)單。
Geneious,
拖放以導(dǎo)入和轉(zhuǎn)換序列數(shù)據(jù)
分享您的數(shù)據(jù)。導(dǎo)入，導(dǎo)出和轉(zhuǎn)換常見(jiàn)文件類型及其注釋和注釋。
組織，搜索和共享序列數(shù)據(jù)庫(kù)
安排和瀏覽你的數(shù)據(jù)庫(kù)你喜歡的。
- 添加和刪??除序列數(shù)據(jù)庫(kù)
- 文檔記錄自動(dòng)保存
- 批量導(dǎo)出
- 批量重命名
- 根據(jù)字段過(guò)濾文檔
- 共享帶注釋的序列文件
- 導(dǎo)出并提交給Genbank
智能NGS文件導(dǎo)入
即使您混合使用不同的樣本和參考序列，也可以將一系列SAM，BAM，GFF，BED和VCF文件放入Geneious中，只需輕松一步即可導(dǎo)入。
支持的格式類型
| 格式 | 擴(kuò)展 | 數(shù) 據(jù) 類 型 | 共 同 來(lái) 源 |
|---|
| BED | *.bed | Annotations | UCSC |
| Common Assembly Format | *.caf | Contigs | Sequencher |
| Clone Manager | *.cm5 | Nucleotide sequences | Clone Manager |
| Clustal | *.aln | Alignments | ClustalX |
| CS FASTA | *.csfasta | Color space | FASTA ABI SOLiD |
| DNAStar | *.seq, *.pro | Nucleotide & protein sequences | DNAStar |
| DNA Strider | *.str | Sequences | DNA Strider |
| Embl/UniProt | *.embl, *.swp | Sequences | Embl, UniProt |
| Endnote (8.0) XML | *.xml | Journal article references | Endnote, Journal article websites |
| FASTA | *.fasta, *.fas, etc. | Sequences, alignments | PAUP*, ClustalX, BLAST, FASTA |
| FASTQ | *.fastq, *.fasq | Sequences with quality | Solexa/Illumina |
| GCG | *.seq | Sequences | GCG, |
| GenBank | *.gb, *.xml | Nucleotide & protein sequences | GenBank |
| Geneious | *.xml, *.geneious | Preferences, databases | Geneious |
| GFF | *.gff | Annotations | Sanger Artemis |
| MEGA | *.meg | Alignments | MEGA |
| Molecular structure | *.pdb, *.mol, *.xyz, *.cml, *.gpr, *.hin, *.nwo | 3D molecular structures | 3D structure databases and programs |
| Newick | *.tre, *.tree, etc. | Phylogenetic trees | PHYLIP, Tree-Puzzle, PAUP*, ClustalX |
| Nexus | *.nxs, *.nex | Trees, Alignments | PAUP*, Mesquite, MrBayes & MacClade |
| PDB | *.pdb | 3D Protein structures | SP3, SP2, SPARKS, Protein Data Bank |
| Documents, presentations | Adobe Writer, LATEX, Miktex | ||
| Phrap ACE | *.ace | Contig assemblies | Phrap/Consed |
| PileUp | *.msf | Alignments pileup | (gcg) |
| PIR/NBRF | *.pir | Sequences, alignments | NBRF PIR |
| Qual | *.qual | Quality ?le | Associated with a FASTA ?le |
| Raw sequence text | *.seq | Sequences | Any ?le that contains only a sequence, |
| Rich Sequence Format | *.rsf | Sequences, alignments | GCGs NetFetch |
| Comma/Tab Separated Values | *.csv, *.tsv | Spreadsheet ?les | Microsoft Excel |
| SAM/BAM | *.sam, *.bam | Contigs | SAMtools |
| Sequence Chromatograms | *.ab1, *.scf | Raw sequencing trace & sequence | Sequencing machines |
| SnapGene | *.dna | Sequences, annotations, metadata | SnapGene |
| Variant Call Format | *.vcf | Variant calls/SNPs | Variant callers and databases |
| Vector NTI sequence | *.gb, *.gp | Nucleotide & protein sequences | Vector NTI |
| Vector NTI/AlignX alignment | *.apr | Alignments | Vector NTI, AlignX |
| Vector NTI Archive | *.ma4, *.pa4, *.oa4, *.ea4, *.ca6 | Nucleotide & protein sequences, enzyme sets and publications | Vector NTI |
| Vector NTI/ContigExpress | *.cep | Nucleotide sequence assemblies | Vector NTI |
| Vector NTI database | VNTI Database | Nucleotide & protein sequences, enzyme sets and publications | Vector NTI |
導(dǎo)出格式選項(xiàng)
任何一組文檔都可以以Geneious native格式導(dǎo)出。
| 數(shù)據(jù)類型 | 格式 |
|---|---|
| DNA序列 | FASTA，Genbank XML，Genebank，Geneious |
| 氨基酸序列 | FASTA，Genbank XML，Genebank，Geneious |
| 色譜圖序列 | ABI，Geneious |
| 有質(zhì)量的序列 | FastQ，Qual，Geneious |
| 注解 | GFF，BED，VCF，Geneious |
| 多序列比對(duì) | Phylip，F(xiàn)ASTA，NEXUS，MEGA3，Geneious |
| 部件 | Phrap ACE，Geneious，SAM / BAM，Geneious |
| 系統(tǒng)發(fā)育樹(shù) | Phylip，F(xiàn)ASTA，NEXUS，Newick，MEGA3，Geneious |
| PDF文件 | PDF，Geneious |
| 出版物 | EndNote 8.0，Geneious |
| 圖表 | CSV或WIG或圖像 |